Topics and Trends in Most Cited Genetic diversity and population structure Papers

Ranked by citations 18 months after publication

Class of 2026 (Papers Published in 2024)

What topics and trends defined most-cited Genetic diversity and population structure research in the Class of 2026?

The most impactful recent research in genetic diversity and population structure highlights a strong shift toward "Adaptive potential" and "Hybridization," which surged significantly in prominence. While foundational "Comparative genomics" declined, the rising focus on "Ancient genomes" underscores a growing reliance on paleogenomics to uncover how past demographic dynamics inform current conservation strategies.

See details ↓

At a glance

Field
Genetic diversity and population structure
Cohort label
Class of 2026 (2024 publications)
Papers analyzed
5,207
Papers ranked
20
Top topics in ranked papers
Ancient genomes, Effective population size, Adaptive potential, Hybridization
Publication window
Jan 1, 2024 – Dec 31, 2024
Eligibility
Research articles; reviews excluded
Citation window
18 months post-publication
18m citation range
35–174
Data source
OpenAlex · Retrieved August 2026
License
CC BY 4.0

Rankings

20 papers ranked by 18-month citation count

#1 of 5,207
17418m citations

Complexity of avian evolution revealed by family-level genomes

Josefin Stiller et al.Nature202410.1038/s41586-024-07323-1

Josefin Stiller, Siavash Mirarab, Guojie ZhangUniversity of Copenhagen, Denmark

Avian phylogenomicsCretaceous-Paleogene extinction eventrapid radiationintergenic regionsCoalescent methodsincomplete lineage sortingHybridizationPhylogenetic discordancegenomic heterogeneityEffective population sizeSubstitution ratesrelative brain sizetaxon samplingDNA composition bias363 bird species218 taxonomic families
#2 of 5,207
9918m citations

Population genomics of post-glacial western Eurasia

Morten E Allentoft, Martin Sikora, Alba Refoyo-Martínez, Evan K Irving-Pease, Anders Fischer, William Barrie, Andrés Ingason et al.Nature202410.1038/s41586-023-06865-0

Morten E. Allentoft, Martin SikoraUniversity of Copenhagen, Denmark

shotgun sequencingAncient genomesMesolithic hunter-gatherersNeolithic transitiondiploid genotype imputationgenomic boundaryBlack Sea to Baltic divideancestry shiftshunter-gatherer replacementrelatedness patternsYamnaya-related ancestryMiddle Don hunter-gatherersGlobular Amphora cultureNeolithic steppe clinewestern SiberiaLake Baikalpopulation turnoverAdmixtureneolithizationcross-continental migrations
#3 of 5,207
7918m citations

Widespread horse-based mobility arose around 2200 bce in Eurasia

Pablo Librado et al.Nature202410.1038/s41586-024-07597-5

Pablo LibradoCentre d'Anthropobiologie et de Génomique de Toulouse, France

Ancient genomesPopulation bottleneckreproductive controlclose-kin matingshortened generation times2200 BCEmodern domestic lineagehorse-based mobilityEurasia expansionlocal horse lineage replacementsteppe peoples migration3000 BCEBotai3500 BCEcentral Asiacorralshorse husbandrydomestication timelinehuman agencysubsistence economy
#4 of 5,207
5618m citations

The hagfish genome and the evolution of vertebrates

Ferdinand Marlétaz et al.Nature202410.1038/s41586-024-07070-3

Ferdinand Marlétaz, Jeramiah J. Smith, Daniel S. RokhsarUniversity College London, United Kingdom

hagfish genomeEptatretus atamijawless fishescyclostomesgnathostomesgenome-wide duplicationsauto-tetraploidization 1R_Vallo-tetraploidization 2R_JVhexaploidization 2R_CYprogrammed DNA eliminationSynteny analysisPhylogenetic analysisChromosomal rearrangementsgene lossosteoclast proliferation geneseye development genesgermline-specific genessomatic cell lineagesgenetic conflict resolutionvertebrate body plan simplification
#5 of 5,207
5618m citations

Hybrid speciation driven by multilocus introgression of ecological traits

Neil Rosser et al.Nature202410.1038/s41586-024-07263-w

Neil Rosser, James MalletHarvard University, United States

homoploid hybrid speciationHeliconius elevatusHeliconius pardalinusHeliconius melpomenePopulation geneticsquantitative trait locus mappingIntrogressionReproductive isolationGene flowislands of divergencedisruptive selectioncolour patternwing shapehost plant preferencesex pheromonesmate choiceadaptive peakmultilocus genetic architecturespeciation with gene flow
#6 of 5,207
5218m citations

Recurrent evolution and selection shape structural diversity at the amylase locus

Davide Bolognini, Alma Halgren, Runyang Nicolas Lou, Alessandro Raveane, Joana L Rocha et al.Nature202410.1038/s41586-024-07911-1

Erik Garrison, Peter H. SudmantHuman Technopole, Italy

amylase locusAMY1 geneAMY2A geneAMY2B genecopy number variationStructural variationHaplotype-resolved assemblypangenome-based approachstructural haplotypesrecurrent mutationagricultural populationsstarch-rich dietspositive selectionAncient genomesGene duplication and lossWest Eurasiansstarch digestionMutation rate variationagricultural revolutiondietary adaptation
#7 of 5,207
4918m citations

The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees

Tingting Shi et al.Molecular Plant202410.1016/j.molp.2024.03.009

Jianquan Liu, Tongming Yin, Jing WangSichuan University, China

super-pangenomePopulusgenomic adaptationdiversificationforest treespangenome analysisStructural variationaccessory genesPopulation geneticsLocal adaptationSpeciationGenome assemblyPresence-absence variationComparative genomicsevolutionary genomics
#8 of 5,207
4518m citations

A lethal mitonuclear incompatibility in complex I of natural hybrids

Benjamin M Moran et al.Nature202410.1038/s41586-023-06895-8

Benjamin M. Moran, Molly SchumerStanford University, United States

mitonuclear incompatibilityrespiratory complex Iswordtail fishhybrid incompatibilityembryonic lethalitymitochondrial proteomeallelic imbalancenon-additive genetic interactionsaccelerated evolutionIntrogressionReproductive isolationthree-gene incompatibilityprotein-protein interactionscomplex I functionHybridizationjuvenile lethalitymitonuclear coevolutionEpistasisspeciation genetics
#9 of 5,207
4518m citations

The genetic origins and impacts of historical Papuan migrations into Wallacea

Gludhug A Purnomo et al.Proceedings of the National Academy of Sciences202410.1073/pnas.2412355121

Gludhug A. Purnomo, Raymond ToblerThe University of Adelaide, Australia

WallaceaPapuan ancestryAustronesian seafarersanatomically modern humans (AMH)New Guinea migrationsPopulation history inferenceAdmixtureAsian-related ancestrylongitudinal countergradientWest Papuan populationsfounding AMH settlersHistorical Period admixtureprehistoric migrationsAncestryPapuan genes and languagesarchaeological and linguistic recordstropical archipelago settlementgenetic isolation
#10 of 5,207
4418m citations

Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea

Xing Li, Yong Wang, Chengcheng Cai, Jialei Ji, Fengqing Han, Lei Zhang et al.Nature Genetics202410.1038/s41588-024-01655-4

Kang Zhang, Honghao Lv, Guusje Bonnema, Yangyong Zhang, Feng ChengChinese Academy of Agricultural Sciences, China

Brassica oleraceamorphotype diversificationStructural variationPangenomegraph-based genome toolsgene expression regulationDNA methylationtranscription factor-binding elementsBoPNYBoCKX3BoKAN1BoACS4BoMYBtfcauliflowerbroccolicabbageornamental kaledomesticationdosage regulation
#11 of 5,207
4118m citations

Global assessment of effective population sizes: Consistent taxonomic differences in meeting the 50/500 rule

Shannon H Clarke et al.Molecular Ecology202410.1111/mec.17353

Dylan J. FraserConcordia University, Canada

Effective population sizeNe50/500 ruleGenetic driftinbreedingAdaptive potentialIUCN Red ListGlobal Human Footprinttaxonomic differencesconservation thresholdsGene flowPopulation structurequantitative reviewgeoreferenced estimatesplantsmammalsamphibiansbirdshuman activities impact
#12 of 5,207
4118m citations

Mind the lag: understanding genetic extinction debt for conservation

Roberta Gargiulo et al.Trends in Ecology & Evolution202410.1016/j.tree.2024.10.008

Roberta GargiuloRoyal Botanic Gardens, Kew, United Kingdom

genetic extinction debttime lagdisturbance eventsgenetic responsesLife-history traitslongevityreproductive strategiesGenetic erosionAdaptive potentialConservation genomicsgenetic parametersdelayed genetic responsePopulation geneticsconfounding factorsConservation assessmentinterpretive frameworkmethodological framework
#13 of 5,207
4118m citations

Reconstructing the Genetic Relationship between Ancient and Present-Day Siberian Populations

Haechan Gill et al.Genome Biology and Evolution202410.1093/gbe/evae063

Haechan GillSeoul National University, South Korea

Siberian ancestrySamoyedic-speaking populationsNganasansLake BaikalYakutiaNative AmericansWest BaikalBelkachi cultureMiddle NeolithicFennoscandiaGreenlandAncient genomesgenetic componentancestral connectionPopulation history inferencenorthern EurasiaChukotkagenetic continuityancestry spread
#14 of 5,207
4018m citations

Resilience of genetic diversity in forest trees over the Quaternary

Pascal Milesi, Chedly Kastally, Benjamin Dauphin, Sandra Cervantes, Martin Lascoux, Tanja Pyhäjärvi et al.Nature Communications202410.1038/s41467-024-52612-y

Pascal Milesi, Martin Lascoux, Tanja PyhäjärviUppsala University, Sweden

QuaternaryPleistocene glacial cyclesEffective population sizeEuropean forest tree speciesPopulation geneticsPopulation history inferenceGenetic diversityRange shiftsLife-history traitsrange sizeAdaptive potentialcomparative phylogenetic analysisPopulation viabilityglacial refugia dynamicstemporal trajectories of Ne
#15 of 5,207
3918m citations

The global distribution of angiosperm genome size is shaped by climate

Petr Bureš et al.New Phytologist202410.1111/nph.19544

Petr Bureš, Tammy L. Elliott, František ZedekMasaryk University, Czech Republic

angiosperm genome sizelarge genome constraint hypothesismutational hazard hypothesispolyploidy-mediated hypothesisclimate-mediated hypothesisgeographic distributionlatitudinal gradientrange sizepolyploidy frequencygrowth formclimatically mediated purifying selectionGenetic driftrelaxed selectionenvironmental filteringunimodal patternGenome size
#16 of 5,207
3818m citations

The genomes of all lungfish inform on genome expansion and tetrapod evolution

Manfred Schartl et al.Nature202410.1038/s41586-024-07830-1

Manfred Schartl, Axel MeyerUniversity of Würzburg, Germany

lungfish genomesgenome expansiontetrapod evolutionWhole-genome sequencingComparative genomicsChromosome-level genome assemblyRepetitive DNAtransposable elementsSynteny analysisgene annotationPhylogenomic analysiswater-to-land transitionsarcopterygian evolutionGenome sizelimb development genesair-breathing adaptationAustralian lungfishSouth American lungfishAfrican lungfish
#17 of 5,207
3718m citations

The genome-wide signature of short-term temporal selection

Michael Lynch et al.Proceedings of the National Academy of Sciences202410.1073/pnas.2307107121

Michael LynchArizona State University, United States

Temporal selectiongenome-wide selection patternsDaphnia pulexpopulation-genomic surveymultigenerational genomic analysisquasi-neutralitynet selection coefficientstemporal variance in selectionFluctuating selectionweak positive selectionminor alleleslinkage islandsNucleotide diversitystanding genetic variationmicrocrustaceaninterannual selection dynamicsGenome-wide datashort-term evolution
#18 of 5,207
3618m citations

Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts

Peter B Pearman, Olivier Broennimann et al.Nature Ecology & Evolution202410.1038/s41559-023-02260-0

Peter B. PearmanUniversity of the Basque Country UPV/EHU, Spain

Genetic monitoringConvention on Biological Diversityclimate niche limitstrailing climatic niche marginsClimate gradientsEuropean Union Birds and Habitats Directivespopulation genetic diversityhabitat alterationclimate change impacts on biodiversityRange shiftsadaptive genetic diversitysoutheastern European countriesconservation capacity buildingclimatic suitabilitybiodiversity monitoringconservation policy
#19 of 5,207
3518m citations

Too simple, too complex, or just right? Advantages, challenges, and guidance for indicators of genetic diversity

Sean Hoban et al.BioScience202410.1093/biosci/biae006

Jessica M. da Silva, Margaret E. HunterThe Morton Arboretum, United States

genetic diversity indicatorsEffective population sizeNe < 500 thresholdwithin-population genetic diversityamong-population genetic diversityAdaptive potentialgenetically distinct populationsConvention on Biological Diversitygenetic rescueDNA-based dataconservation prioritizationpopulation loss indicatorglobal conservation commitmentsgenetic diversity monitoringgenetic diversity reporting
#20 of 5,207
3518m citations

Phytop: a tool for visualizing and recognizing signals of incomplete lineage sorting and hybridization using species trees output from ASTRAL

Hong-Yun Shang et al.Horticulture Research202410.1093/hr/uhae330

Yongpeng Ma, Rengang ZhangKunming Institute of Botany, Chinese Academy of Sciences, China

incomplete lineage sortingIntrogressionHybridizationPhylogenetic discordanceASTRALPhytopILS indexIH indexphylogenomic data visualizationlineage detectionsimulated phylogenetic dataphylogenetic uncertainty quantification
Methodology

PRI identifies high-impact research using a transparent, topic-agnostic framework applied consistently across scientific domains. Bibliographic records are drawn from OpenAlex, including publication dates, citation relationships, and document types.

This ranking covers the Class of 2026 cohort: journal articles published in 2024. Reviews and other non-article document types are excluded to ensure comparability.

Research impact is quantified with an 18-month post-publication citation window—the number of citing works published within 18 months of each paper's publication date. This metric captures early impact while controlling for publication age.

An LLM-based relevance classifier then reviews each candidate's title and abstract to confirm substantive alignment with the target domain. Only papers classified as relevant appear in the final ranking.

Zheng Su, Tinsley Li, Thematic Shifts in Early-High-Impact Cancer Genomics and Diagnostics Research: A Bibliometric and Semantic Analysis. bioRxiv 2026.07.04.736459; doi: https://doi.org/10.64898/2026.07.04.736459

Cite this ranking

Pepkio Research Index (PRI). Topics and Trends in Most Cited Genetic diversity and population structure Papers, Class of 2026. https://pri.pepkio.com/top-papers/genetic-diversity-and-population-structure/2026. Accessed 2026-10-24.

Methodology
Zheng Su, Tinsley Li, Thematic Shifts in Early-High-Impact Cancer Genomics and Diagnostics Research: A Bibliometric and Semantic Analysis. bioRxiv 2026.07.04.736459; doi: https://doi.org/10.64898/2026.07.04.736459