Benchmarking short and long read polishing tools for nanopore assemblies: achieving near-perfect genomes for outbreak isolates
Most Cited Paper
in Salmonella and Campylobacter epidemiology
18 Months Post-Publication
Class of 2026
“Benchmarking short and long read polishing tools for nanopore assemblies: achieving near-perfect genomes for outbreak isolates”
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pri.pepkio.com
Topics
Oxford Nanopore sequencing · bacterial genome assembly · polishing tools · long-read polishing · short-read polishing · medaka · Racon · NextPolish · Pilon · Polypolish · POLCA · Salmonella Newport · outbreak source tracking · genome accuracy · homopolymer errors · indels · phylogenetic resolution · nanopore assembly errors
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Pepkio Research Index (PRI). Topics and Trends in Most Cited Salmonella and Campylobacter epidemiology Papers, Class of 2026. https://pri.pepkio.com/top-papers/salmonella-and-campylobacter-epidemiology/2026. Accessed 2026-07-24. Methodology Zheng Su, Tinsley Li, Thematic Shifts in Early-High-Impact Cancer Genomics and Diagnostics Research: A Bibliometric and Semantic Analysis. bioRxiv 2026.07.04.736459; doi: https://doi.org/10.64898/2026.07.04.736459