Pangenome-genotyped structural variation improves molecular phenotype mapping in cattle
Most Cited Paper
in Genetic and phenotypic traits in livestock
18 Months Post-Publication
Class of 2026
“Pangenome-genotyped structural variation improves molecular phenotype mapping in cattle”
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pri.pepkio.com/top-papers/genetic-and-phenotypic-traits-in-livestock/2026/
Topics
Pangenome graph construction · HiFi haplotype-resolved assemblies · PanGenie genotyping · structural variant genotyping from short reads · DeepVariant · expression quantitative trait loci (eQTL) mapping · splicing quantitative trait loci (sQTL) mapping · cattle testis transcriptome · transposable elements · STN1 · MYH7 · CEP89 · ASAH2 · linkage disequilibrium between SVs and small variants · causal candidate structural variants · minor allele frequency filtering (MAF > 0.1) · short-read alignment limitations for SV detection · medium coverage HiFi validation · 16 cattle assemblies pangenome · 307 short-read sample cohort
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Pepkio Research Index (PRI). Topics and Trends in Most Cited Genetic and phenotypic traits in livestock Papers, Class of 2026. https://pri.pepkio.com/top-papers/genetic-and-phenotypic-traits-in-livestock/2026. Accessed 2026-07-15. Zheng Su, Tinsley Li, Thematic Shifts in Early-High-Impact Cancer Genomics and Diagnostics Research: A Bibliometric and Semantic Analysis. bioRxiv 2026.07.04.736459; doi: https://doi.org/10.64898/2026.07.04.736459