# ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data

*PRI Rank #9 · Topics and Trends in Most Cited Genomics and Chromatin Dynamics Papers, Class of 2026*

*Canonical URL: https://pri.pepkio.com/top-papers/genomics-and-chromatin-dynamics/2026/rank-9*

| Field | Value |
| --- | --- |
| Rank | #9 |
| 18m citations | 94 |
| Journal | Nucleic Acids Research |
| Year | 2024 |
| DOI | 10.1093/nar/gkae358 |
| Corresponding authors | Shinya Oki |
| Institution | Kumamoto University, Japan |

**Ranking page:** [Topics and Trends in Most Cited Genomics and Chromatin Dynamics Papers, Class of 2026](https://pri.pepkio.com/top-papers/genomics-and-chromatin-dynamics/2026)

**Paper link:** [10.1093/nar/gkae358](https://doi.org/10.1093/nar/gkae358)

## Topics

ChIP-Atlas · Chromatin immunoprecipitation · ATAC-seq · DNase-seq · Bisulfite-seq · epigenomic landscapes · Chromatin structure · Hi-C · eQTL · ChromHMM · FANTOM5 enhancers · GWAS SNPs · ClinVar variants · Diff Analysis · differentially bound regions · differentially accessible regions · differentially methylated regions · Cis-regulatory elements · Chromosome organization · data-mining tools

## Cite this ranking

```
Pepkio Research Index (PRI). Topics and Trends in Most Cited Genomics and Chromatin Dynamics Papers, Class of 2026. https://pri.pepkio.com/top-papers/genomics-and-chromatin-dynamics/2026. Accessed 2026-10-28.

Zheng Su, Tinsley Li, Thematic Shifts in Early-High-Impact Cancer Genomics and Diagnostics Research: A Bibliometric and Semantic Analysis. bioRxiv 2026.07.04.736459; doi: https://doi.org/10.64898/2026.07.04.736459
```